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Install: R Rtools toolchain (Windows only), Hugin Expert, and then within R install packages as follows: | |
Install devtools | install.packages("devtools") |
Install dependencies of RHugin |
|
Install RHugin | devtools::install_github("huginexpert/rhugin") |
If necessary, install dependencies of DNAmixtures | install.packages(c("Rsolnp", "Matrix", "numDeriv"))
|
Install DNAmixtures | install.packages("DNAmixtures", repos = "http://dnamixtures.r-forge.r-project.org/",
type = "source", INSTALL_opts = "--no-multiarch") |
Install dependencies of KinMix | install.packages(c("ribd","statnet.common"))
|
If simulation of epg's is required, install pcrsim package and its dependencies, especially gWidgets | See here |
Install KinMix | devtools::install_github("petergreen5678/KinMix")
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OR, on Windows, in case only have Hugin for one architecture | devtools::install_github("petergreen5678/KinMix",INSTALL_opts="--no-multiarch")
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library(KinMix)
demo(KMdemo)
KinMixLite is available on CRAN,
so can be installed using install.packages("KinMixLite")
, or go to CRAN explicitly at
https://cran.r-project.org/package=KinMixLite
If the installation fails because of missing dependencies, the full procedure is as below:
Install: R Rtools toolchain (Windows only) and then within R install packages as follows: | |
Install devtools, etc | install.packages(c("devtools", "methods", "rlang")) |
Install dependencies of gRain and gRain itself | if (!require("BiocManager")) install.packages("BiocManager")
BiocManager::install(c("graph","Rgraphviz"))
BiocManager::install(c("gRbase","gRain"), force=TRUE)
|
If simulation of epg's is required, pcrsim package and its dependencies, especially gWidgets | See here |
Install KinMixLite (this automatically includes installing gRaven, DNAmixturesLite and dependencies if not already present) | install.packages("KinMixLite") |
library(KinMixLite)
demo(KMdemo)